The computer works fine with the original Commodore 040 board installed ( with the rare DMAC and Ramsey ). So, there is nothing wrong with the Amiga 3000T or those rare chips. What I need is for someone that has an Amiga 3000T-040 and the CS MKII 060 board installed to check the jumpers and list them here. Then I can set mine the same way and the computer should work just fine.
Otherwise, I will have to part everything out and sell the thing on feebay. I can get at least $200 just for the rare DMAC / Ramsey set. I could get at least $100 just for the front plastic cover that is in perfect condition ( extremely rare, most are broken or yellowed or both ). I could get at least $50 for the hard to find Kickstart 3.1 roms for the Amiga 3000, and at least $100 for the mint high-density Amiga 1.77 MB disk drive. The A3000T PSU would also fetch at least $100. The motherboard with no chips would fetch at least $100, and I could get quite a bit of money for the chips.
I do not screw around with Amiga computers that do not work. I never have problems like this with any of my Amiga 1000, 500, or 2000 machines. They work great. But, as soon as I try to "upgrade" an Amiga to work more like a modern computer, that is when I start to have all kinds of problems.