According to Doobrey the latest (final) version of IDEFix was at ICOMP but that link is now dead. Luckly there was a link on EAB posted by Thomas. (The number of times Thomas has solved my Amiga problems is uncountable.)
So to close this off. Hopefully for posterity.
Suggest you first have a Workbench 3.1 floppy(I always do) so you can boot from it if your Amiga freezes from the IDEFix97 install. Which it will if you have an IDE/SD Card on port 2 (Out 2).
This is so you can boot from floppy and ed your HardDisk:S/Startup-Sequence, to comment ";" out IDEFix. Until it's replaced with a patched version. Then you can go back in and uncomment it.
Sequence:
If you install the Aminet version of IDEFix97 (with IDEFix 119.16):
http://aminet.net/driver/media/IDEfix97.lhaYou need to use the Doobrey patch from Aminet:
http://aminet.net/driver/media/IDEFix_patches.lhaUse the version of spatch from this Gui Version of spatch (worked for me):
http://aminet.net/util/wb/Spatcher1_0.lhaAnd patch this version of the IDEFix executable (119.17):
http://web.archive.org/web/20140405173451/http://icomp.de/t/bin/eb_final.lhaIDEFix is in the "expansion" directory of the archive.
With the patched IDEFix executable in the expected directory (usually c) everything should work.
Check your Startup-Sequence to see where its executing from.
Or PM me and I'll send you the patched IDEFix executable file. (To be sure have v 3.5 of IDEFix97 installed)
I'm tempted to post it back to Aminet but I'm sure if I did that I guess I'd be slaughtered and cremated twice over.
Of course this is only relevant if you have an IDE Breakout/Splitter like the one in the pic above. Although I believe from reading this is also a problem with the Buddha driver too.
Unpatched, IDEFix will probably(likely) crash on a machine with this type of IDE splitter with an IDE/CF Card adaptor on Port 2 (Out 2).
Once you have the patched version executed it sees the IDE/CF Card fine on the 2nd IDE Port.
Cool. But something that I though would take an hour takes the whole afternoon and I still haven't cut and drilled and mounted the IDE/CF Card holder in the back of the A4000.... Sigh...