No chance. First, that is where my DVI output goes, second there's no way in hell I'm not using those punch-outs after what I spent for these cases 
I have the Kipper2K HDMI there, so I agree... Wait, how does a DVI fit there?
definitely use the "punch-outs", but think of them more as as patterns than a "punch-outs" and use the small files, and the results will reflect the amount of time you spend on them.
I did 4 USB, 2 ESATA and one PS/2. Did that many years ago, but I could still clean them up (more) with small files to make them look better. But honestly, there are no USB port inspectors.
Sure wish I'd have bought one of those KS1200 cases...