Oh, it should work if you change the device name on the icon. So GVPSCSI.device rather than SCSI.DEVICE for your existing drive. And MNTSD.device for the current equipment.
(Select the icon for HDToolbox, select "Information" from the drop down menus).
More here, it's badged as for Amigados 3.x for large partition support, but should work very similarly for Kickstart / Workbench 2 and upwards.
http://www.pjhutchison.org/uae_hdtoolbox.htmlAfter the right device driver has been selected, you should be able to read the geometry from the card, which should give you correct Cylinder, Head and Surfaces values.
One tip - I partition drives with a PC laptop to have small partitions 500MB-2GB at the start especially for Amiga boot partitions. But, I'm usually using classic / non upgraded AmigaDOS systems.
That way I've got something any Amiga should be able to boot from, regardless of how out of date the Kickstart and Workbench are.