The Core is continously improved...
To be honest, I'm personally not too hot about ISA extensions at all. The major problem is here that it segments the platform while not offering a reasonable return. Just consider instructions like EORI.L #...,? What are the intended use cases, and which software would profit from that? Which compilers would support it, which assemblers would? Does it enable any "killer features"?
Let me tell you a bit from my personal experience: In my world (ISO business, WG1), we first make a requirements analysis before we attempt a new "work item". That is: What exactly do you attempt to do, and which requirements does it need to satisfy?
In essence, the ISA modifications up to here do not buy you much, but instead requires potential new software (for the Amiga? oh well...) to potentially distinguish between a legacy Motorola core and the Phoenix core. How will we do that? Another bit in ExecBase->AttnFlags? How many revisions of the core will there be? We might be running out of bits shortly, and it may get more and more inconvenient to update software.
In reality, how many programs did use the new features the newer processors of the Motorola series introduced? Essentially, Motorola only had two ISAs: The original 68K one, and the extended 68020 ISA. Everything between was really minor, and the majority of Amiga software uses the 68K ISA. A small part requires 68020+, but there is almost nothing that is specifically 68060/68040 only. I would prefer if extensions would continue in this tradition.
Instead of adding a series of seemingly nice, but in reality almost useless low-level additions, it would be much more sensible to add higher level functionalities that enable new killer features the Amiga did not have originally, and from which multiple programs could benefit. Say, JPEG decoding or MP3 decoding. None of the new instructions make these tasks simpler, easier or faster - they are too low-level. What it would probably take would be a hardware engine for some of the components of these standards (Huffman decoder, DCT, digital filters... hence, multiply-add instructions, shift-and-mask instructions and so on).