Fixed this issue and thought I would share to save someone the same headache:
After I went through:
- Reseating and Testing Memory extensively.
- Fixed all my improper Mask and Maxtransfers.
- Trying various 68040.librarys. (Still trying the best one for WHDLoad, will let you know what one works best)
- Reinstalling OS 3.9 and playing with different Startup-Sequences.
I was able to get everything working by using Picasso 96 Drivers for the Retina. For some very unknown reason to me, only the base install of Cybergraphx 4 from the cd would work, but once I upgraded version to any of the Release Candidates (RC4,RC5,RC66), it would give 80000004 errors as soon as the card was accessed. Shame I'm more familiar with Cybergraphx and I can get a bit more resolution and speed from it as well.
Strange since this card worked fine in another 3000 with the identical chipset and motherboard version. The only difference between them is that one was made in the USA and the other in Hong Kong.
Oh, well hope this helps someone down the road save some time!
It now runs perfect, the 3640 with the newer ramsey/dmac works just fine with all static column zips.
Now I have to get to installing patches for speed up and improved stability. Any suggestions?