The 68060 runs much cooler than the 68040--it runs on 3.3 volts vs. the 68040's 5 volts. I added a CPU cooler to the 060 my Cyberstorm PPC to keep the ambient temperature lower around the 604 processor and help keep it cool. I didn't have any overheating issues with the 68060 but I did with the PPC proccesor and the 5v 5mm stock fan which I replaced with a 10mm 12v fan.
That being said, keeping the 060 CPU cool always helps and the 20mm fan will be much better than the 10mm one due to the amount of air it can move. If it fits, get it. Better to put in a fan with higher specs if you're replacing the stock fan which in the case of the PPC cards, at least, was way underpowered for the job it need to do.
Here is where I bought my CPU fans from:
http://stores.ebay.com/a4cool?_trksid=p4340.l2563They had a big enough selection of CPU coolers and fans with all the specs listed that I found exactly what I needed.