@JimDrew
Cool, it is nice to see you responding to this thread. I have always been a fan of your emulation products, particularly Emplant Pro and Fusion. 
I hope I got half of my post about Emplant correct.
I do have two questions: One, does the emplant board help the accuracy of emulation in Fusion. I have tried timing set both to amiga and to emplant and could not really tell a difference (I was using at the time, an A3000, A3640, PII+, 16 meg fast, and A2065).
Second what does the 3.11 patch for Fusion Fix over 3.1? Is there a way to buy or obtain this Fusion 3.11 patch? I have original disks for Fusion 3.1 (together with PCx).
Yes, your info was basically correct!
Yes, the EMPLANT board does improve the accuracy and compatibility. Some programs (like benchmark programs and some games) use the VIA timers directly, and even though the Amiga is pretty accurate, you can detect if the VIA emulation is being used vs. the real thing. When applications were banging on the VIA bits, things could get off when you don't have the real hardware. Quicktime was one thing that poked at the hardware directly.
I went through my source code, and found the changes.txt file:
Changes to V3.2 (04/03/2000)
--------------------------------------------------------------------------
* Work-around for DEVPAC flognp1 bug.
* Added ICP Transfer Priority. You can now specify the priority the Mac
runs at while the drives are accessed from the Amiga side though ICP.
* Fixed OpenDevice problem with ethernet.
* Fixed ethernet query bug.
* Added TD64 support. A partition that is partially or completely above
the 4G point will cause FUSION to fail to start if TD64 support is not
available. Partitions are still limited to 4G in size.
* Added support for block sizes other than 512. Up to 64K valid.
* Fixed ICP MacBinary file copy hang. Thanks go to Fred Wright for being
the first person to accurately describe a method of reproducing the
bug so i could track it down.
* Auto-start doesn't auto-quit if you change the ICP or cpu settings.
* Added tooltype and cli switch for specifying parameter ram file.
**************************************************************************
Changes to V3.12 (02/18/2000)
--------------------------------------------------------------------------
* Changed ethernet from software loaded to a hardware card for Open
Transport support. Cleaned up ethernet for better Amiga ethenet card
support; Ariadne card now works.
* Fixed cursor problem with old Lucas Arts games.
* Fixed problem with QD based video drivers.
* Fixed slight problem with autosense SCSI data.
* New ADB drivers with (nearly) all Mac keys mapped.
* Added tooltype support; switches from cli now have Workbench tooltype
equivalents.
* Auto-start now also implies auto-quit
* Changed 060 initial settings; now starts with only SuperScalar off.
**************************************************************************
Changes to V3.11 (xx/xx/99)
--------------------------------------------------------------------------
* Fixed misc. problems with the interface related to the auto-iconify
feature (Tall thin windows on WB fixed).
* Fixed Timer interrupt bug that prevented QueBase from playing.
* Added support for a couple more ROMs.
* Updates to video drivers. Released to public.
* Updates to RsrvCold, and RsrvWarm which is now called RsrvKick.
Released to public.
**************************************************************************
Changes to V3.1 (02/14/98)
--------------------------------------------------------------------------
* Fixed MonitorID gadget setting. The value was set and saved in the
config file correctly, but not displayed after loading a new config
or starting the emulation setup.
* Added Store Buffer option to the CPU cache control window. This is
an 060 only cache option.
* Fixed a major problem with the emulated SCSI support. If you did not
have an EMPLANT board installed (and selected for use by FUSION), you
could not boot from any non-EMPLANT SCSI device. If you had an
EMPLANT board installed (and selected as the hardware type), then you
could boot from ANY SCSI device even if you did not have a drive
connected to EMPLANT's SCSI port.
* Fixed a problem with the Direct video drivers when an invalid monitor
ID was given.
* Added support for the floppy eject/insert icons for thousands and
millions display modes. Also corrected placement problems when the
screen's mod was not the same as its width.
* Added new gadget 'Start Delay' to ADVANCED setup and renamed the gadget
'Iconify on startup' to 'Auto-Iconify'. The Start Delay checkbox
defaults to ON (checked). Having this gadget checked will insert a
3 second delay before the startup sound. This gives you extra time to
press (and HOLD) either SHIFT key to disable extensions. Having this
gadget unchecked boots the MAC as normal, with no additional delay.
* Fixed AmiDirectXL startup in 640x480 mode. The autoscroll flag was not
being set correctly, so ECS machines would lose the bottom part of the
display until you re-opened the mode in the Monitors control panel
* Changed serial port code to open/close an AmigaDOS device only when the
MAC actually opens/closes its serial port driver. This leaves the serial
and parallel ports available for use by the Amiga when the MAC is not
trying to access them.
* Changed keyboard emulation to be an extended keyboard. You can use
'KeyCaps' to see all of the new keys available.