AROS can use UAE (intregrated) as it is also open-source, but I doubt
they will everget much more to than the 68k-emu, atleast not until the are
prepared to drag their kernel down with this stuff.
The (very) long term plan is to make a 68k version of AROS specially adapted to UAE, with many function calls which just redirect to the native AROS function call. It won't be possible to share memory between the emulated environment and the native one, but it could be possible to share screens, windows, the clipboard, the filesystem, the audio, and so on.
Ideally, you should be able to run 68k programs seamlessy that way, and they will work as long as they do not attempt at
directly communicate, via message passing, with native programs.