Can they play ocs, aga, rtg games?
What versions of ths AmigaoOS each can handle ?
How do you get floppies or .adf onto these things
How do you build a hard drive partition?
How do you get the Kickstart on these things?
Can one use these on a network?
Which kickstarts can etch of these things use. 1.3, 3.1, (a native 3.9 kickstart (not softbooted))?
What ports do each of these things have. joystick, serial, floppy, s-video, VGA, hdmi, (example natami looks very complete)
what is the chipset (ie OCS/ECS, AGA, and RTG)
Which 680x0
Can one use whdload?
What is the Amiga experience? somewhat subjective (aka WinUAE is very cool, but isn't quite the experience as running an OCS game on an A500 or A2000)
I am assuming this is the non-complete list of the different FPGA amigas
Minimig comes with HDL sources.
FPGA Replay, sources predicted to be released at a later time.
NatAmi, closed in all ways.
Any version of Kickstart and AmigaOS you can get you hands on will run asfaik.
Floppies are saved as .ADF onto a SD-flashcard. And show up as ordinary DFx: Swapping discs is done with an OSD menu.
Harddrives use a imagefile just like a software based emulator. But on SD-card.
Partitioning ought to be possible the usual way from the Amiga enviroment.
Kickstart is saved as a file on the SD-card and loaded at boot into a part of the DRAM memory which is then "write protected" because the FPGA controls all the signaling. Which also why the same memory chip can show up as chip or fast ram, or even ram disc depending on configuration.
The FPGA Replay have the option of networking with the daughterboard for the MC68060. Personally I would preferred the transceiver chip on the mainboard
FPGA Replay has 2x joystick, PS/2 mouse+keyboard, S-Video, Composite-video, DVI analog and digital, SD-slot, DC +5V input via circular-DC-plug or Molex-4p or 2-pin 100 mil pinhead, I/O expansion slot, PCB pads for misc I/O, RS232.
There's USB and Jtag as well. But I suspect they are only for debugging, at least the last one

. Can you clarify MikeJ?
The CPU is an 68020 with enchantments that will outdo even A4000 asfair. Especially a 256 byte instruction and data cache does the trick.
WHDLoad should work. But someone else maybe knows more?
As an FPGA implements the hosted computer on circuit level it will be as responsive. The screen output might pose a challenge, especially if refresh rates differs with an non-integer quote. The sound also pose a challenge as the amiga-side sample rate may differ in the same way with an non-integer number, and the volyme control is also (misused) as extra D/A bits. The analog RC-filter that dims the power-led on the original amiga may be implemented as an digital filter which may differ in characteristics. In the same way SID 6581 is hard to reproduce.