This is not specifically a Natami question, but something I've wondered about FPGA clones in general.
How practical would it be to use any leftover space on the FPGA to create a secondary core that mimics a simpler computer, like say a VIC-20, that could run in tandem with the main Amiga core?
The FPGA is configured upon bootup.
Therefore if you want a VIC20, or C64, or PC Engine, then you select that configuration upon bootup, and the hardware literally becomes that machine.
Of course you do need someone to create each of the above configurations in the first place, which isn't trivial, but I'm sure that they will come in due course.
It doesn't really make any sense to run two configurations at the same time, especially since they would contend for the I/Os on the FPGA. Far better to use the spare space for future expansion - the 3D core, the DSP, etc.