(E)UAE isn't designed to take real Amiga-chips, otherwise such a version would have been available for Amigas (with 060 or PPC). Changing that would require a major overhaul, and wether such a version would be more compatible than the normal SW-only version is more than questionable.
Putting such a card into an EFIKA is even more pointless, as it can take only 1 PCI card, and an Amiga without GFX-card doesn't really cut anymore (ask anone who is running a BPPC without one).
An Minimig/Clone-A in a joystick may be fun, one with fast 68k might be a nice tinkering toy, one with GFX-card AND AGA might even proove usefull to some, but an PPC-Amiga with just AGA is a pain in the a...