@freqmax:
I think there is some confusion. In never suggested a second FPGA. That was suggested by ThomasML. I was just asking if there was a technical reason to have any FPGA soldered directly on the board. It seems that it is only a cost issue.
My original thought was that since the BGA package of the larger, more powerful FPGAs is the biggest limiting factor on some of the enhancements some people are considering, maybe having a board with nothing but the FPGA and a connector would make sense. This would allow larger more powerful FPGAs to be used in multiple designs, without every hardware revision having to be factory assembled.
ThomasML implied that this would be cost prohibitive. Thus answering my question. He also added that he is considering at a later date, working on a slot to add a second FPGA. While this was not an answer to the question I was asking, it was interesting none the less.