1) A JIT 68k emulation for starters. AROS can only run 68k apps on 68k.
Ok this is one we don't have any real plans for, but we have made sure it can be added is so desired, and the hardware is capable.
2) Unified input system. AmigaInput looks really good.
I think our Prefs system is certainly over a very high standard.
3) Resource tracking for memory, message ports, messages, and semaphores
Yup, AROS has RT.
4) Unified MMU interface (difficult to implement for a system with multiple CPU targets.)
Difficult one, as we have had many disscusions as to how this is best done, and since there are so many different types of MMU, an mmu.library has been considered.
5) Limited memory protection. Protection for critical memory areas; Kernel memory areas, all code areas, unused memory.
MP has been talked to death,,, we can add limited MP (as you mention) with realative ease, but old APPs won't like it or care about it, which totally defetes the point. And limited MP is only one step away from useless.
6) WarpUp emulation
Not applicable. This has never been a goal, no doubt, on a PPC it could be easy, very easy to write a warpos.library.
7) Symmetric Multi-Processing (SMP): support for multiple CPU's
Yup, much has be talked about. And is certainly planned.

Multithreading
Hello, this is an AmigaOS clone :-D Of course you can multithread :-)
9) New library model with dynamic interfaces depending on the methods used to invoke the library by the application
We have decided to stick with the original AmigaOS library interface (it's smaller, faster and is just as flexable imho), but Fabio has plans to improve it... I personally don't think we need it improved (each to their own)
10) Fully virtualised address space
No, I don't think that is a planned feature, though I remember the PCI guys talking about something to do with this...
11) 3D drivers (Warp3D followed by Warp3D Nova)
Of course 3D drivers are being planned, though AROS has chosen OpenGl rather than Warp3D
12) The application library (something that should have been there since at least 2.x)
I'm not sure what you mean... I'm sure AROS has an equivilent.
13) Roadshow (although I understand other Amiga-like OS's will get this later)
Roadshow? if it can be compiled for AmigaOS 3.1, it can be compiled for AROS.
14) Mount Rainier support
I have no Idea what that is, see comment 13
15) AmiDock. I was never a big fan of Docks, but AmiDock in 3.9 won me over. 4.0 looks great, and from what I hear will be quite well integrated with the OS (for example application management through application.library)
see above comments.
This is correct to the best of my knowledge :-D