603e and 604e chips sit on small tiny balls of solder (please don't twist this into a joke). ;-)
There's no pins on the CPU that go through the PCB at all. Even the 68k CPU's pins on CSMK3/CSPPC don't go through the entire PCB (this only applies to CSMK3 and CSPPC though). That's why both CPUs on CSMK3 and PPC are very, very, VERY fragile, and should not be pressed down on, never, ever, EVER!
At one time, there was a 160Mhz 603e chip that had pins and was soldered and in fact looked similar to the SCSI chip (on BPPC) which was more "damage resistant" than the next generation which used bubble soldering afterwards.