I've been having some similar probs. I've been putting in a baracuda 36 Gig ultra wide on my scsi2 with an adaptor. You just have to fiddle around with them for a while. I ended up setting it up on my 4000. I think when the partitions are bigger then 4 gig you have to do a quick install rather then the normal install other wise you screw them up.
Will
My system 1200,060 Blizz PPC, mediator- Voodoo 3 3000, Sb 128, Fly video TV, 10-100 ethernet.