The AGA-version just sees the digital output of Lisa + a few "holes" in the chipset to which it can be reprogrammed.
The ECS-Version allmost completly replaces Denice in FPGA makeing all those things possible.
Read the ECS-version is the more advanced one.
But then, you can allready run the AGA-version in resolutions up to 1280x1024 in 256 colors or HAM8. These modes are available for every OS-friendly app, while the 12Bit-modes on the ECS-Indi are only supported by SW written for it ..... unless you plan to write/port an RTG-system to it ...