From what you describe, It is not a hardware issue but a "patched" or mixed software problem. Try AGA mode, that will rule out the basics, then another graphic driver, like P96 (v2.1c), or go back to the original install version that was packaged with the card. if you meet criteria, try OS 4.1; the software Is a complete new take on the hardware
Yes many of us love our Classic Amiga's and some folks comments are inflammatory for that reason only