Could be interesting having two win partitions one for winuae exclusive and another for daily usage
That's probably a good idea.
Then again, if you need full Windows desktop too, then why not just run WinUAE from a desktop shortcut when you need it? That's way faster than rebooting the system.
By having 2 partitions, you can have a complete Windows and desktop on one, and a minimal install made with nLite on the other. That way you have full compatibility on the Windows side, and a faster and more efficient emulation environment on the other.
Rebooting Windows isn't the chore people claim it to be, if you apply some knowledge, time and effort. My XP boots very quickly, and shuts down in seconds. That's because I took the time to tailor it to my needs, instead of just installing from an OEM disc.
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Del Rio