Ok,  I went back to the drawing board.  I removed the board out of my Amiga 4000/060 and installed it in my 4000/040.  I booted off the original disk and was able to turn the controller back on.  It must have been something in the 060 causing problems?  Anyway, I connected my SCSI Zip drive to it and it sees it just fine.  However, it can handle reboots no problem but when I power down and then back up, it gives me an error that it cannot find the softscsi.device.  I open oktagon prefs and all options are ghosted.  I then reboot off the floppy again and I am good until a cold restart.  
When I checked the box to enable the controller, I clicked "save".  I even looked in the pull down menus but nothing.  The oktagon icon is in the expansion drawer and there isn't anything special in the startup-sequence of the floppy other than "binddrivers".  Do I have to have a HD attached to make it work on a cold boot?  I am using a 40GB IDE HD in the 4000.