Thanks everyone for the help and and the great replies.
My guess is that since the original power supply was missing, somewhere along the way someone might have try to plug in some other type if improper power supply and that was what fried that zero ohm resistor. I made sure that the ATX PC adapter I made was right and checked and re- checked with my meter so I hope that I am safe using the jumper.
I love the feeling that I was able to save it from the scrap bin....to me it feels better to have fixed something nostalgic than to buy it new.

. Amiga mid-life crisis, hahaha.