Hi QuillOmega0,
A "mask" ROM is a device that is programmed by the manufacturer and whose contents cannot be changed. The standard ROMs in your machine will be "mask" ROMs.
A non-mask ROM would be a re-programmable device. For example, you can get EPROMs, which can be erased by exposure to UV-light (and then re-programmed) and EEPROMs, which can be electrically erased via a programmer.
You could, for example, use an EEPROM programmer to copy your ROM chips and use the data to program your own EEPROM device. Why? Ummmm... well it'd be useful as a backup I suppose. If you damaged your ROM chips in the future you could easily make your own replacements!!!
It sounds to me like AmigaKit are telling you there is a jumper on the board to select between mask ROMs (standard Amiga ROM chips) and non-mask ROMs (devices you have programmed yourself, or someone else has programmed for you).
Does this make sense?
Apple Hammer