There are a lot of programs that will report the 060 as an 040. With the proper libs copied in, you should be all set, though. The system boots, so obviously it found the CPU. :lol:
You might want to try one of the newer "cpu" executables (which should recognize the 68060 properly, and to make sure your copyback cache is enabled) or check "WhichAmiga" just to put your mind at ease.