Hmm... this is getting wierd!
Checked and there was a line at the top of the startup-sequence that loaded IDEFix. I guess this was activating a patch/hack to get past the 4gb limit.
So I commented out the line, and then re-enabled rom updates with setpatch.....
....and it patches, reboots, a quick flicker off the disk led and the machine crashes, and then comes up with a guru meditation error.
If I disable rom updates again, it loads workbench fine - but can no longer see the 2 drives beyond the 4gb limit. So looks like it was IDEFix all along.
So I backed up all my data off the 2 "offending" partitions, then removed them (to be left with a single 2 GB "system" drive at the beginning of the disk).
On starting now, the machine starts up, loads setpatch/rom updates, reboots, starts to load for a sec and then just sits there with a blank screen and the hdd led stuck on?
Removed the kickflash while I was doing all this to take it out of the equation by the way.
If the system was built with idefix active, has it set something up thats incompatible with the os 3.9+bb2 scsi.device?
Can't recall having all this problem before.....