@Argus:
If no chips are be missing, then go for it - if it works it works, if it doesnt work it doesnt work :-D.
The only issue I can think of is that the part in the onboard ROM containing the SCSI-Apollo.device would be missing. You should be able to test that without any soldering though by just jumpering the SCSI-jumper and powering on the Amiga. If I remember correctly this makes the Amiga try to boot from the Apollo SCSI and if no device is connected to it, it should take a very long time too boot or not even boot at all.
Btw, be aware that the SCSI on the Apollo is very buggy - HDToolBox in 3.9 crashes as far as I know and it doesnt work with all brands of drives. Also make sure you read the documentation supplied on the Apollo install-disk regarding its SCSI.
(edit):
What Amiga and Apollo exactly do you have? The A1200 Apollos requires a separate SCSI-module as far as I know and has a 40-pin connector for that. The A3000/A4000 Apollos on the other hand has the SCSI-circuitry integrated on the Apollo itself and thus has a 50-pin connector for the SCSI-chain directly on it.
/Patrik