I'm assuming by "ESM" you mean the Early StartUp Menu or Screen...
If your getting sprite corruption there, then I don't think it's anything to do with stuff you may have running in the StartUp-Sequence, nor does it appear to be faulty ROMS (where the image data for the pointer is stored) as if the ROMS were faulty this would show up on the Amigas BootStrap check...

Have you tried removing the CF HDD board to see if the problem still occurs when it's removed, if so and the problem still remains then it would seem that you have damaged your Amiga in some way and if not then it must be something to do with the CF adapter itself...

Simplest way to check is remove the CF board and power up your Amiga and check out the Early Startup Screen and see if the problem still occurs...
