First comment is congrats!
I always preferred the 3000D over any other Amiga, I've owned all of them at one point and IMHO it is the perfect size/performance of the Amigas.
You did all you really need to do, Buster 11, 3.1 ROMS, and updated SCSI. Now sit back and enjoy it.
Some tips and thoughts - First the 3000D does not have overwelming heat issues to speak of, even with your 040. That said, I keep the feet slightly elevated to keep the bottom cooler.
Finding the latest ramsey and dmac aren't worth the time and money. Many systems with the older chips run just fine.
The power supply is perfectly adequate for a fully expanded 3000D. I have had - Warp Engine 3040, Phonepak, Delphina, Retina Z3, and an Ariandne in one system with no issues.
That all I can think of at the moment...
Enjoy...
Amazed, simply amazed that the battery didn't leak. Many 3000's have issues thanks to leaky battery.