Nasty problem in OS3.9

[kolla]

You have not really described what you mean with "freeze", is it total hang, or is mouse and intuition alive?

I'd try to isolate the real problem first. Boot while pressing alt key to have loadwb skip wbstartup, and then check out the program in wbstartup, for example...
* do they start if you start them manually by double clicking them?
* do they have "Wait till finished" checked?
* are the protection bits sane?

[kolla]

UPDATE:

I booted with no startup-sequence and renamed the WBSTARTUP to WBSTART.

OK, that works, but you could just have pressed ALT key instead

When i double clicked the dock that opened up fine, but anything else such as MagicMenu and other stuff from that folder are causing the Amiga to freeze.

Sounds interesting

[kolla]

If your drive and partitions are "big", be sure you use a scsi.device and filesystem that are capable of handling them right.

[kolla]

What kind of help do you want?

[kolla]

And do you have some input to what I wrote in post 18?

[kolla]

When machine freezes, is the HD light constantly on?