Could it be dirty mains? Either on the A500, monitor or both? Do you have any interference in your vacinity that you know of?
Is there any way you could test your kit somewhere else? Like at a friends house?
If you've tried a different motherboard, different monitor, and AmigaKit says the Indi is okay, then there's a good chance it is.
How about your monitor cable? Could you try a different one? Or have you already?