As for PFS3, I have no idea how the on-disk data structures look like and how effective the recovery tools are on the 68k platform.
The tools are for 68k (obviously they work with MorphOS as well). They've always worked for me when I've made a mess of things.
SFS may be tricky, though, as the file system was something of a work in progress until the author ceased development and handed over the source code. If I remember correctly, there was no assured compatibility between the different file system versions and platform variants. So you probably had to choose wisely when picking the file system and the recovery tool.
Yeah it indeed is unfortunate that certain parties took liberties and changed the filesystem without permission (the original agreement was for porting only). I've been told however that MorphOS SFSDoctor is able to recover OS4 SFS filesystems. Pegasos II users can be MorphOS CD as a recovery CD, others would need to plug the HDD to MorphOS capable system.