Reading the
hardware description:
** If an A3000/A4000 accelerator is used then the Zorro slots are capable of functioning as Zorro III slots, however if an A1200 accelerator is used then they can only be used as Zorro II slots.
This might have something to do with it, as the Zorro II primary 8MB auto-config space overlaps with the PCMCIA memory area. However, IMO for the PCMCIA port to shut down, it would require that some Zorro card appears at 0x600000 area.
Anyway, it'd be quite easy to test it: Just set up the system without the Z3i-board and see if the PCMCIA port works then.
the 6860 PCI board
I wouldn't call it PCI board really, as the Mikronik Z3i PCI slots are inactive.