I know it's old but I just found it by Googling for "CyberStorm SCSI" as a friend has this exact problem. Then I encountered the symptoms myself but with a WarpEngine SCSI.Including the BB patch causing my machine display a blank screen and lose the drives when booting. I knewe it wanted to boot but just stood there with the floppy drive clicking.
Now I eventually also got hold of a CyberStorm SCSI myself. And when I set it up I read the mamual through and made sure both my hardware and software were set up correctly. That said, you guys missing something! I did not see one mention of what is highly important device driver settings: MaxTransfer and Mask!
These, though they are technical, MUST be set up correctly as per the instructions!! Otherwise you can expect missing drives, crashes and gerneal unstability! :-o
I don't know why they designed it this way and not so the device driver did all these techncal settiings itself but all controllers differ and they must be set correctly.
Ergo, you cannot pull a HD from your A4091 and stick it on your CyberSCSI, without adjusting the settings and at least setting MaxTransfer to the smallest safest value supported by both controllers.