I am wandering what would you prefer Amikit/Dopus or Win2000 or WinXP ?
I am of course taling about emulation of the Amiga computer not a genuine Amiga.
I don't understand your question. If you want to run Amikit/DOpus on WinUAE, you need WinXP/2K anyway. So you don't have to choose, you can use both. You can even use both at the same time, combine advantages of both.
Regarding Amikit, I don't like any of the pre-built Amiga packages (AIAB, AmigaSYS, AmiKit, ClassicWB etc.). I rather prefer to use my own customised AmigaOS installation with only those tools I need and those colors and fonts I like.
Also I don't have only one WinUAE config, but I rather have many of those "my own customised AmigaOS installations" with different emulated hardware and software releases.
Bye,
Thomas