If you have the second set of sockets installed (closer to the front of the board, I believe,) I think you can safely just put the ROMs in there, not in the sockets where the tower is though. Some mixup on early revision boards are the reason for the tower. As for A2000 ROM compatibilty, I've never gotten that to work, though A2000 ROMs may be missing the scsi.device needed for the A3000's SCSI anyway.