Boot from the HD, setup the CF exactly as the HDD is now and use Dopus to copy everything or use the copy all command from shell to do it. You need all the icons and flags to move as well, just doing a drag and drop wont work properly from what I have experienced.
+1 as I can confirm this happening to me more than once
oh & welcome back to Amiga land kromosto & don't worry the Amiga "way" will come back to you again:):pint:
