Nice! The EZ-Z4 tower looks good. I considered it also because it's hard to do it yourself. But i decided to go for a self-modified custom tower still

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1. As I am building this tower from scratch, can I use any ibm style floppy drive cable, or will I have to get this from an amiga dealer?
I think it's okay to use any cable that fits the floppy drive and mobo.
2. Can I use floppies from an A2000, or better yet Amiga HD floppies on my A1200T? Do these floppies have jumpers for df0:, df1: ?
Floppy drives from A2000 should work just ok, just remember to set the one you use as DF0 (with jumpers). Dunno about the HD ones.
Good luck with your towering!
