You're very welcome :-)
My initial thought is that you should be able to get everything you need to get your CDrom to work from the Emergency-Disk (seeing as that gets it working ok)
The driver CD1 is in Devs/DOSDrivers of the floppy.
IDEfix files are in C of the floppy.
The CD filesystem is in L of the floppy.
Going from memory your HDD startup-sequence in Workbench:S will also need the lines:-
If exists C:IDEfix
C:IDEfix
End IF