USB has in essence replaced ISA
(both are crap!)
Is USB crap? I would say not. It has limitations, but most of things I disliked about USB 1.x and 2.0 have been corrected with USB3. As well, a big part of my problems with USB were/are related to shytty drivers.
ISA < EISA < VLB < PCI < PCI-X < PCIe, and whatever else will come along. I didn't include off-shoots like MCA and such ilk. It's been pretty neat to watch things progress over time. The story is that Intel intentionally crippled AGP, and if true it would be a great example of the industry manipulating itself for planned obsolescence.