No I didn't change my clock jumpers back to the motherboard clock... Excuse my ignorance... How do I do this?
Check out the Amiga 3000 manual
http://oldcomputers.net/Amiga_3000_manual.pdfPage G-1
This is what I "think" you need to check, but it has been a while you may want to double check:
J100 QUADCLK
This one will may or may not need to be changed (do you have a 16 or 25 mhz 030 on the motherboard)
J102 BRDCLK 2-3 (this sets the system clock to internal clock) processor cards usually want this changed to external
J104 CPUCLK 1-2 (this sets the the cpu to the internal clock) processor cards usually want this changed to external