Actually, sines can be reproduced very accurately in MP3 since it works by splitting a sample into its frequency portions (via FFT).
More precisely many C64 sounds are square, triangle, sine, noise modified in frequency and amplitude vs time. And likely to contain many high frequencies to make it sound right. Exactly the frequencies that lossy compression will remove.
Also intentionally used misaligned sample frequencies on Amiga can suffer in the compression process.