Some of the issues sound weird. There's a memtest command included with MorphOS, perhaps the way memory is configured is OK for OSX but MorphOS adjusts timing in a different way, maybe you should launch memtest to be 100% sure your issues are not memory related. Are your IDE cables 80-wire ones? Otherwise expect odd behaviour and weird crashes. It's weird that automatic install didn't work properly.
What's your PowerMac version?
You should download "grunch" to install more apps.
It may be a good idea to visit
http://www.morphzone.org to contact more MorphOS users.