Just buy a MorphOS G4 tower based setup, you'll resolve all your drive reading problems without Linux and without file corruption.
That's as helpful as when people ask how to do something in MySQL and someone writes back to use PostgreSQL..
it is completely possible as I mentioned above to do it with fs-uae on linux, and saves forking out for additional hardware, and a pricey OS licence.
Having a PFS3 FUSE fs or something on linux would still be a useful thing of course.