I understand your problem that every time you copy a command from the PC to the Amiga you lose the executable bit. This means you can't copy TransDisk, LHA or UnZIP in order to get get the tools you need on to your Amiga. If you create a Tool icon inside Amiga Forever, for example for LHA, then copy it along with LHA, then LHA will have an icon. The problem is that LHA is a CLI command not a Workbench command so you won't be able to use it from the icon. You will still need to use the CLI to execute it, which won't work unless it has the executable protection bit. Your only hope is one of the following:
1. Obtain a disk with the protect command on it. Copy the commands you need to your Amiga and make them executable with Protect.
2. Obtain a disk with LHA, LZH, or Unzip on it. Inside Amiga Forever, create an archive containing the commands you need. Copy the archive to your Amiga. Unarchive it on the Amiga, and you will end up with files with the executable bit preserved.
3. Buy a Workbench disk :-)
[EDIT]
4. A GUI-based ADF writer would also work if you copied its Tool icon (.info) as this would be executed as a Tool from Workbench, but I can't find any of these which work on 1.3.
[/EDIT]
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moto