Like I said before. You're not making a fair comparison.
You should compare what you have now with Windows 3.1 because that's what was avaliable on the PC back then. Sit down and work with that and you will feel exactly the same like you do now.
But, it's also two completely different systems and they are designed to work in different ways so even an up to date amiga will feel different to work with.
Honestly, it would be more fair to compare with linux in the way that it works. In linux you still need to do quite a few things in a shell to make things work. It's just a difference in design and depending on what you're more used to you'll feel more comfortable using.
I still think windows is extremely badly designed basically since it more or less have all system files thrown into one directory. To me the catalog structure that Amiga OS has feels more logical and easier to grasp. But that's my personal opinion.
My point is, if you just give yourself time and experiment enough you will learn how it works, how it's built and as you do you'll feel that you are in control and know what you're doing.
And the fact is, a computer never does anything unless it's been told to do it no matter what system you have.
