Gekko has L2 cache and some SIMD instructions, both missing from the AMCC PPC440EP. While AMCC PPC440EP has some multimedia instructions they have little practical importance, while Gekko's SIMD is subset of altivec.
AMCC PPC440EP core is from 1999, same year as Gekko.
Yes, but I'll have to check with the Wii/GC community to see if they actually use that for their homebrew DVD player software, I'm sure the Panasonic Q was fully optimized. Parralelism does help but if you can't feed the cpu fast enough (as was the case with SAM) then it's all for naught. Improving the speed at which the cpu received data improved the performance here.
There were some performance benchmarks posted a while back regarding performance of the various PPC Amiga platforms and SAM(s) took a beating. Perhaps now, those need to be re-run. Many people have pointed out that MorphOS feels faster(than OS4) and this issue could be a major factor. Now that it has been resolved, perhaps MorphOS team will be satisfied with the performance of SAM and issue a port.