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I think it's normal to have a few entries in the autoconfig space for a Cyberstorm III - I'm not sure if plugging the CVPPC card in would make much difference, as it's on the PCI bus and not in the Autoconfig space, but I'm not sure, my setup is broken so I can't check :-( I wonder if 3.1 is crashing due to not having the proper Libraries installed, have you done a fresh install?
A Good way to test system stability is to not load anything, just leave it sitting at the insert disk screen and see if the animation keeps running, if it doesn't, you know there's a definite hardware issue somewhere.
Robert