In my case it seems that the problem is the boing updates on the 3.1 system.
Are you sure?
I know of "BoingBags" for AmigaOS 3.5 and 3.9 - but for 3.1?
Never heard of a BoingBag for OS 3.1 ...
Also I am curious....do I really need 3.9 after all, or is enough to have just 3.1 with ClassicWB?
I'd say that depends on what you prefer:
Minimalist Workbench = OS 3.1
WB 3.1 + some 3rd party tools like e.g. AmiDock, some eyecandy like backdrops and so on = OS 3.9
I switched to OS 3.5 and then to OS 3.9 - and never regretted it. I will never go back to OS 3.1 - I prefer the OS 3.9 look & feel...
I know that it is a matter of preferences, but I wonder if it is just a waste of time to use 3.9 (btw I have a 030/50 with 32 mb as expansion card, not even sure if that is enough to run 3.9 decently....it runs fine on my dual 8 core, but that's not fair LOL)
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On a 030/50 OS 3.9 is a bit slow (my old A1.2k has 030/40). On my A4kPPC with 060/50 it really flies...