Yeah, it seems to be the way the ROM behaves at startup, which is fine for 1.3 but not for later systems that have an early startup menu accessed by holding down both mouse buttons;-
"pressing the left mouse button during startup disables HD automount, pressing the right mouse button disables HD cache"
http://amiga.resource.cx/exp/adscsi2000I haven't come across a later version of the ROM.
In theory you could disassemble the ROM and take out the routine. Very fiddly coding job though.
EDIT:: Then you'd have to burn the modified code back to the ROM for testing.
And I guess 2 routines would have to be slightly modified, one for each button.
How are your 68K coding skills.?