The signal involved is named _CCK and comes from Agnus. So you could try swapping that out also.. In case another chip is shorting it out, it also goes to Paula and the external expansion slot.
CCK comes from Agnus. _CCK comes from the 74F04 inverter at U33.
If the problem was the CCK clock from Agnus, it's likely there would be other problems besides the mouse/joystick as CCK is used by Paula, Denise, and Gary.