I got it working, there where an issue with WinUAE not correctly mounting the iso on the Amiga side. I didn't remember that Mac disks normally mount as "unknown" on the Amiga but they mount so after mounting a standard ISO9660 disk and switching to my macdisk it all went well.
The only problem I have now related to GFX modes. As WinUAE cant display 15 and 24 bit modes I'm stuck with AGA or Windowed (b/w). Has anyone worked out a way to solve that?
I have even tried 8-bit modes but my screen is just blank (white).